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Comparison of Brownian dynamics algorithms with hydrodynamic interaction
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10.1063/1.3626868
/content/aip/journal/jcp/135/8/10.1063/1.3626868
http://aip.metastore.ingenta.com/content/aip/journal/jcp/135/8/10.1063/1.3626868

Figures

Image of FIG. 1.
FIG. 1.

Log-log plots of (a) ⟨Rg⟩ vs. N and (b) D t vs. N, obtained for Gaussian chains with a LJ potential by using different BD-HI algorithms.

Image of FIG. 2.
FIG. 2.

Runtime behavior of different BD-HI algorithms for Gaussian chains with a LJ potential as a function of the chain length. (a) Linear plots and (b) log-log plots.

Tables

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Table I.

Relative differences (based on values of Rg and D t ) between the Cholesky procedure and the other HI procedures. Model: Hookean springs with H = 3 and LJ potential.

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Table II.

Relative differences between the Cholesky procedure and the other HI procedures for several N values. Model: Hookean springs with H = 3, H = 6, and LJ potential.

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Table III.

Typical values of Chebyshev polynomial order L according to N. Model: Hookean springs with H = 3 and LJ potential.

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Table IV.

Relative differences between the Cholesky procedure and the other HI procedures for several N values. Model: Chain with harmonic springs between all pair of beads. (Ref. 14).

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Table V.

Relative differences between the Cholesky procedure and the other HI procedures for several N values. Model: Wormlike chain.

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/content/aip/journal/jcp/135/8/10.1063/1.3626868
2011-08-26
2014-04-18
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752b84549af89a08dbdd7fdb8b9568b5 journal.articlezxybnytfddd
Scitation: Comparison of Brownian dynamics algorithms with hydrodynamic interaction
http://aip.metastore.ingenta.com/content/aip/journal/jcp/135/8/10.1063/1.3626868
10.1063/1.3626868
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