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A high-speed magnetic tweezer beyond 10,000 frames per second
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10.1063/1.4802678
/content/aip/journal/rsi/84/4/10.1063/1.4802678
http://aip.metastore.ingenta.com/content/aip/journal/rsi/84/4/10.1063/1.4802678
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Figures

Image of FIG. 1.
FIG. 1.

A schematic of the high-speed magnetic tweezer with a fiber-coupled superluminescent diode (SLD) for illumination and a high-speed CMOS (hs-CMOS) camera for detection. The inset shows a 256 × 256 8-bit brightfield-normalized still-frame, taken from a video acquired at 35 087 fps. The still frame shows a partially molten 2.5 μm diameter reference bead and a 1.05 μm diameter streptavadin-coated magnetic bead, which is tethered to the surface via a DNA hairpin.

Image of FIG. 2.
FIG. 2.

Schematic illustration of data flow in our high-speed magnetic tweezer. Images from the hs-CMOS camera are transferred (with delay) via ethernet cable to the CPU. The CPU transfers the data to the GPU, where XYZ coordinates are generated.

Image of FIG. 3.
FIG. 3.

Three ways to examine the instrumental tracking error of a magnetic tweezer. Figure 3(a) shows the position of a partially molten polystyrene reference bead as a function of time with (corrected) and without (raw) reference bead subtraction. Figure 3(b) shows the Allan deviation of bead position as a function of the measurement time, for lateral X and axial Z fluctuations. Figure 3(c) shows the PSD of bead motion, with and without reference bead subtraction. For clarity, lateral Y-fluctuation data is not shown in Figures 3(b) and 3(c) , but it qualitatively matches the X-fluctuation data.

Image of FIG. 4.
FIG. 4.

The time-domain X,Y,Z positions of a magnetic bead tethered to a 1566 bp dsDNA molecule (Figure 4(a) ) can be analyzed using Allan deviation (Figure 4(b) ). Best-fit curves to Allan deviation data give measurements of the trap stiffness κ and probe drag α.

Image of FIG. 5.
FIG. 5.

Extension trajectory of a DNA hairpin undergoing stochastic folding/unfolding transitions. Data was acquired at 35087 fps, then low-pass filtered to 701.74 fps. Inset shows a 0.011 s residence in the folded state. The histogram of particle positions is well-described by a sum of two Gaussians, separated by 17.6 nm.

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/content/aip/journal/rsi/84/4/10.1063/1.4802678
2013-04-29
2014-04-20
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752b84549af89a08dbdd7fdb8b9568b5 journal.articlezxybnytfddd
Scitation: A high-speed magnetic tweezer beyond 10,000 frames per second
http://aip.metastore.ingenta.com/content/aip/journal/rsi/84/4/10.1063/1.4802678
10.1063/1.4802678
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