Discrete instability in the DNA double helix
Chaos 19, 043101 (2009); doi:10.1063/1.3234244
Published 5 October 2009
You are not logged in to this journal. Log in
Modulational instability (MI) is explored in the framework of the base-rotor model of DNA dynamics. We show, in fact, that the helicoidal coupling introduced in the spin model of DNA reduces the system to a modified discrete sine-Gordon (sG) equation. The MI criterion is thus modified and displays interesting features because of the helicoidal coupling. In the simulations, we have found that a train of pulses is generated when the lattice is subjected to MI, in agreement with analytical results obtained in a modified discrete sG equation. Also, the competitive effects of the harmonic longitudinal and helicoidal constants on the dynamics of the system are notably pointed out. In the same way, it is shown that MI can lead to energy localization which becomes high for some values of the helicoidal coupling constant.
©2009 American Institute of Physics
| History: | Received 17 January 2009; accepted 28 August 2009; published 5 October 2009 |
| Permalink: |
http://link.aip.org/link/?CHAOEH/19/043101/1 |
KEYWORDS and PACS
PUBLICATION DATA
1054-1500 (print)
1089-7682 (online)
REFERENCES (40)
For access to fully linked references, you need to log in.
For access to fully linked references, you need to Log in.
- R. E. Franklin and R. G. Gosling,
Nature (London) 171, 740 (1953) . - J. D. Watson and F. H. C. Crick,
Nature (London) 171, 737 (1953) . - M. H. F. Wilkins, W. E. Seeds, A. R. Stokes, and H. R. Wilson,
Nature (London) 172, 759 (1953) . - F. H. C. Crick and J. D. Watson, Proc. R. Soc. London A223, 80 (1954).
- S. W. Englander, N. R. Kallenbach, A. J. Heeger, J. A. Krumhansl, and S. Litwin,
Proc. Natl. Acad. Sci. U.S.A. 77, 7222 (1980) . - S. Yomosa, Phys. Rev. A 27, 2120 (1983).
- S. Yomosa, Phys. Rev. A 30, 474 (1984).
- S. Takeno and S. Homma,
Prog. Theor. Phys. 70, 308 (1983) . - S. Homma and S. Takeno,
Prog. Theor. Phys. 72, 679 (1984) . - M. Peyrard and A. R. Bishop, Phys. Rev. Lett. 62, 2755 (1989).
- T. Dauxois, M. Peyrard, and A. R. Bishop, Phys. Rev. E 47, R44 (1993).
- M. Barbi, S. Cocco, and M. Peyrard,
Phys. Lett. A 253, 358 (1999)
C. B. Tabi, A. Mohamadou, and T. C. Kofane, - L. V. Yakushevich,
Phys. Lett. A 136, 413 (1989) . - L. V. Yakushevich, A. V. Savin, and L. I. Manevitch, Phys. Rev. E 66, 016614 (2002).
- L. V. Yakushevich, Nonlinear Physics of DNA, 2nd ed. (Wiley, New York, 2004).
- G. Gaeta,
Phys. Lett. A 190, 301 (1994) - K. Forinash, T. Cretegny, and M. Peyrard, Phys. Rev. E 55, 4740 (1997).
- E. Zamora-Sillero, A. V. Shapovalov, and F. J. Esteban, Phys. Rev. E 76, 066603 (2007).
- C. B. Tabi, A. Mohamadou, and T. C. Kofane,
J. Comput. Theor. Nanosci. 5, 647 (2008) . - C. B. Tabi, A. Mohamadou, and T. C. Kofane,
J. Phys.: Condens. Matter 20, 415104 (2008) . - I. Daumont, T. Dauxois, and M. Peyrard,
Nonlinearity 10, 617 (1997) . - J. Cuevas, J. F. R. Archilla, Yu. B. Gaididei, and F. R. Romero,
Physica D 163, 106 (2002) . - P. V. Larsen, P. L. Christiansen, O. Bang, and Yu. B. Gaididei, Phys. Rev. E 69, 026603 (2004).
- Y. S. Kivshar and M. Peyrard, Phys. Rev. A 46, 3198 (1992).
- A. V. Gorbach and M. Johanson,
Eur. Phys. J. D 29, 77 (2004) . - J. Meier, G. I. Stegeman, D. N. Christodoulides, Y. Silberberg, R. Morandotti, H. Yang, G. Salamo, M. Sorel, and J. S. Aitchison, Phys. Rev. Lett. 92, 163902 (2004).
- J. Leon and M. Manna, Phys. Rev. Lett. 83, 2324 (1999).
- P. Marquié, J. M. Bilbault, and M. Remoissenet, Phys. Rev. E 51, 6127 (1995).
- M. Daniel and V. Vasumathi,
Physica D 231, 10 (2007) . - T. Dauxois,
Phys. Lett. A 159, 390 (1991) . - S. Zdravković and M. V. Satarić,
Phys. Scr. 64, 612 (2001) . - S. Zdravković and M. V. Satarić,
Int. J. Mod. Phys. B 17, 5911 (2003) . - S. Zdravković and M. V. Satarić,
Europhys. Lett. 78, 38004 (2007) . - C. B. Tabi, A. Mohamadou, and T. C. Kofane,
Eur. Phys. J. D 50, 307 (2008) . - M. Remoissenet, Phys. Rev. B 33, 2386 (1986).
- J. Leon and M. Manna,
J. Phys. A 32, 2845 (1999) . - M. Wadati, T. Lizuka, and T. Yajima,
Physica (Amsterdam) 51D, 388 (1991) . - M. Salerno and Y. S. Kivshar,
Phys. Lett. A 193, 263 (1994) . - M. Salerno, Phys. Rev. A 46, 6856 (1992).
- G. Gaeta, Phys. Rev. E 74, 021921 (2006).







