Journal of Chemical Physics
The Journal of Chemical Physics
Search:
   
 
 
 
Previous Article
Solvation and dielectric dispersion in optical electron transfer
The effect of dielectric dispersion of the solvent on the energetics of optical electron transfer is determined quantitatively by variations of the free energy of solvation of the species being photoi...
Next Article
An exactly solvable two-component solution having a ``closed-loop'' phase diagram
A two-component lattice model is considered in which each portion of a type A (type B) molecule which faces a neighboring site can be in any one of qA (qB) different states, only one of which can form...

Molecular dynamics with coupling to an external bath

J. Chem. Phys. 81, 3684 (1984); doi:10.1063/1.448118

Issue Date: 15 October 1984

You are not logged in to this journal. Log in

H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak
Laboratory of Physical Chemistry, The University of Groningen, Nijenborgh 16, 9747 Ag Groningen, The Netherlands
In molecular dynamics (MD) simulations the need often arises to maintain such parameters as temperature or pressure rather than energy and volume, or to impose gradients for studying transport properties in nonequilibrium MD. A method is described to realize coupling to an external bath with constant temperature or pressure with adjustable time constants for the coupling. The method is easily extendable to other variables and to gradients, and can be applied also to polyatomic molecules involving internal constraints. The influence of coupling time constants on dynamical variables is evaluated. A leap-frog algorithm is presented for the general case involving constraints with coupling to both a constant temperature and a constant pressure bath. The Journal of Chemical Physics is copyrighted by The American Institute of Physics.
History: Received 30 April 1984; accepted 27 June 1984
Permalink: http://link.aip.org/link/?JCPSA6/81/3684/1
BUY THIS ARTICLE   (US$24)
Download PDF (727 kB) View Cart

KEYWORDS and PACS

Keywords
PACS
  • 61.20.Ja
    Structure of liquids and solids; crystallography Classical, semiclassical, and quantum theories of liquid structure Computer simulation of static and dynamic behavior
  • YEAR: 1984

PUBLICATION DATA

ISSN:
0021-9606 (print)   1089-7690 (online)
Publisher:
AIP is a member of CrossRef AIP

REFERENCES (37)

For access to fully linked references, you need to log in. For access to fully linked references, you need to Log in.
  1. L. V. Woodcock, Chem. Phys. Lett. 10, 257 (1970).
  2. D. J. Evans, Mol. Phys. 37, 1745 (1979).
  3. T. Schneider and E. Stoll, Phys. Rev. B 13, 1216 (1976).
  4. H. C. Andersen, J. Chem. Phys. 72, 2384 (1980).
  5. H. Tanaka, K. Nakanishi, and N. Watanabe, J. Chem. Phys. 78, 2626 (1983).
  6. G. Ciccotti and A. Tenenbaum, J. Stat. Phys. 23, 767 (1980).
  7. T. Schneider and E. Stoll, Phys. Rev. B 17, 1302 (1978);
  8. 18, 6468 (1978).
  9. Y. Hiwatari, E. Stoll, and T. Schneider, J. Chem. Phys. 68, 3401 (1978).
  10. J. M. Haile and H. W. Graben, J. Chem. Phys. 73, 2421 (1980).
  11. D. Brown, Information Quarterly for MD and MC Simulations (Daresbury Laboratory, Warrington, 1982), Vol. 4, p. 32.
  12. J. P. Ryckaert and G. Ciccotti, J. Chem. Phys. 78, 7368 (1983).
  13. M. Parrinello and A. Rahman, Phys. Rev. Lett. 45, 1196 (1980);
  14. J. Appl. Phys. 52, 7182 (1981);
    J. Chem. Phys. 76, 2662 (1982).
  15. M. Parrinello, A. Rahman, and P. Vashishta, Phys. Rev. Lett. 50, 1073 (1983).
  16. S. Nosé and M. L. Klein, Phys. Rev. Lett. 50, 1207 (1983);
  17. J. Chem. Phys. 78, 6928 (1983).
  18. S. Nose and M. L. Klein, Mol. Phys. 50, 1055 (1983).
  19. A. W. Lees and S. F. Edwards, J. Phys. 15, 1921 (1972).
  20. E. M. Gosling, I. R. McDonald, and K. Singer, Mol. Phys. 26, 1475 (1973).
  21. W. G. Hoover, A. J. C. Ladd, R. B. Hickman, and B. L. Holian, Phys. Rev. A 21, 1756 (1980).
  22. J. Q. Broughton, G. H. Gilmer, and J. D. Weeks, J. Chem. Phys. 75, 5128 (1981).
  23. W. G. Hoover, D. J. Evans, R. B. Hickman, A. J. C. Ladd, W. T. Ashurst, and B. Moran, Phys. Rev. A 22, 1690 (1980).
  24. W. G. Hoover, A. J. C. Ladd, and B. Moran, Phys. Rev. Lett. 48, 1818 (1982).
  25. D. J. Evans, J. Chem. Phys. 78, 3297 (1983).
  26. D. J. Evans, and G. P. Morriss, Chem. Phys. 77, 63 (1983).
  27. J. M. Haile and S. Gupta, J. Chem. Phys. 79, 3067 (1983).
  28. D. Brown and J. H. R. Clarke, Mol. Phys. 51, 1243 (1984).
  29. R. W. Hockney and J. W. Eastwood, Computer Simulation Using Particles (McGraw-Hill, New York, 1981).
  30. J.-P. Ryckaert, G. Ciccotti, and H. J. C. Berendsen, J. Comput. Phys. 23, 327 (1977).
  31. W. F. van Gunsteren and H. J. C. Berendsen, Mol. Phys. 34, 1311 (1977).
  32. H. J. C. Berendsen and W. F. van Gunsteren, in The Physics of Superionic Conductors and Electrode Materials, edited by J. W. Perram, NATO ASI Series B (Plenum, New York, 1983), Vol. 92, p 221.
  33. H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, and J. Hermans, in Intermolecular Forces, edited by B. Pullman (Reidel, Dordrecht, 1981), p. 331.
  34. A. DiNola, H. J. C. Berendsen, and O. Edholm, Macromolecules (in press).
  35. A. DiNola, H. J. C. Berendsen, K. Hallenga, and W. F. van Gunsteren (to be published).
  36. W. F. van Gunsteren, H. J. C. Berendsen, J. Hermans, W. J. G. Hoi, and J. P. M. Postma, Proc. Natl. Acad. Sci. U.S.A. 80, 4315 (1983).
  37. W. F. van Gunsteren and H. J. C. Berendsen, J. Mol. Biol. 176, 559 (1984).
  38. J. P. M. Postma, H. J. C. Berendsen, and J. R. Haak, Faraday Symp. Chem. Soc. 17, 55 (1982).
  39. K. Remerie, W. F. van Gunsteren, and J. B. F. N. Engberts, J. Am. Chem. See. (in press).
  40. Groningen Molecular Simulation System. Requests to be addressed to the third author.

CITING ARTICLES

For access to citing articles, you need to log in.
For access to citing articles, you need to Log in.