Interaction of low-energy electrons with the pyrimidine bases and nucleosides of DNA
J. Chem. Phys. 127, 085105 (2007); doi:10.1063/1.2757617
Published 30 August 2007
You are not logged in to this journal. Log in
We report computed cross sections for the elastic scattering of slow electrons by the pyrimidine bases of DNA, thymine and cytosine, and by the associated nucleosides, deoxythymidine and deoxycytidine. For the isolated bases, we carried out calculations both with and without the inclusion of polarization effects. For the nucleosides, we neglect polarization effects but estimate their influence on resonance positions by comparison with the results for the corresponding bases. Where possible, we compare our results with experiment and previous calculations.
©2007 American Institute of Physics
| History: | Received 29 May 2007; accepted 19 June 2007; published 30 August 2007 |
| Permalink: |
http://link.aip.org/link/?JCPSA6/127/085105/1 |
KEYWORDS and PACS
- 87.14.Gg
DNA, RNA - 87.15.Kg
Biomolecular interactions; membrane-protein interactions - 31.15.-p
Calculations and mathematical techniques in atomic and molecular physics excluding electron correlation calculations - 34.80.Gs
Molecular excitation and ionization by electron impact - 34.80.Bm
Elastic scattering of electrons by atoms and molecules - YEAR: 2007
RELATED DATABASES
PUBLICATION DATA
0021-9606 (print)
1089-7690 (online)
REFERENCES (58)
For access to fully linked references, you need to log in.
For access to fully linked references, you need to Log in.
- B. Boudaïffa, P. Cloutier, D. Hunting, M. A. Huels, and L. Sanche,
Science 287, 1658 (2000) . - B. Boudaïffa, P. Cloutier, D. Hunting, M. A. Huels, and L. Sanche,
Radiat. Res. 157, 227 (2002) . - M. A. Huels, B. Boudaïffa, P. Cloutier, D. Hunting, and L. Sanche,
J. Am. Chem. Soc. 125, 4467 (2003) . - F. Martin, P. D. Burrow, Z. Cai, P. Cloutier, D. Hunting, and L. Sanche, Phys. Rev. Lett. 93, 068101 (2004).
- R. Panajotovic, F. Martin, P. Cloutier, and L. Sanche,
Radiat. Res. 165, 452 (2006) . - For a recent review, see L. Sanche,
Eur. Phys. J. D 35, 367 (2005) . - M. A. Huels, I. Hahndorf, E. Illenberger, and L. Sanche, J. Chem. Phys. 108, 1309 (1998).
- H. Abdoul-Carime, M. A. Huels, E. Illenberger, and L. Sanche,
J. Am. Chem. Soc. 123, 5354 (2001) . - M.-A. Hervé du Penhoat, M. A. Huels, P. Cloutier, J.-P. Jay-Gerin, and L. Sanche, J. Chem. Phys. 114, 5755 (2001).
- H. Abdoul-Carime, P. Cloutier, and L. Sanche,
Radiat. Res. 155, 625 (2001) . - R. Abouaf, J. Pommier, and H. Dunet,
Int. J. Mass Spectrom. 226, 397 (2003) . - S. Denifl, S. Ptasinska, M. Cingel, S. Matejcik, P. Scheier, and T. D. Märk,
Chem. Phys. Lett. 377, 74 (2003) . - S. Gohlke, H. Abdoul-Carime, and E. Illenberger,
Chem. Phys. Lett. 380, 595 (2003) . - G. Hanel, B. Gstir, S. Denifl, P. Scheier, M. Probst, B. Farizon, M. Farizon, E. Illenberger, and T. D. Märk, Phys. Rev. Lett. 90, 188104 (2003).
- A. M. Scheer, K. Aflatooni, G. A. Gallup, and P. D. Burrow, Phys. Rev. Lett. 92, 068102 (2004).
- H. Abdoul-Carime, S. Gohlke, and E. Illenberger, Phys. Rev. Lett. 92, 168103 (2004).
- S. Denifl, S. Ptasińska, M. Probst, J. Hrušak, P. Scheier, and T. D. Märk,
J. Phys. Chem. A 108, 6562 (2004) . - S. Denifl, S. Ptasińska, G. Hanel, B. Gstir, M. Probst, P. Scheier, and T. D. Märk, J. Chem. Phys. 120, 6557 (2004).
- S. Feil, K. Gluch, S. Matt-Leubner, P. Scheier, J. Limtrakul, M. Probst, H. Deutsch, K. Becker, A. Stamatovic, and T. D. Märk,
J. Phys. B 37, 3013 (2004) . - H. Abdoul-Carime, J. Langer, M. A. Huels, and E. Illenberger,
Eur. Phys. J. D 35, 399 (2005) . - R. Abouaf and H. Dunet,
Eur. Phys. J. D 35, 405 (2005) . - K. Aflatooni, A. M. Scheer, and P. D. Burrow,
Chem. Phys. Lett. 408, 426 (2005) . - A. M. Scheer, C. Silvernail, J. A. Belot, K. Aflatooni, G. A. Gallup, and P. D. Burrow,
Chem. Phys. Lett. 411, 46 (2005) . - S. Ptasinska, S. Denifl, V. Grill, T. D. Märk, P. Scheier, S. Gohlke, M. A. Huels, and E. Illenberger,
Angew. Chem., Int. Ed. 44, 1647 (2005) . - S. Ptasińska, S. Denifl, B. Mróz, M. Probst, V. Grill, E. Illenberger, P. Scheier, and T. D. Märk, J. Chem. Phys. 123, 124302 (2005).
- S. Ptasinska, S. Denifl, P. Scheier, E. Illenberger, and T. D. Märk,
Angew. Chem., Int. Ed. 44, 6941 (2005) . - P. D. Burrow, G. A. Gallup, A. M. Scheer, S. Denifl, S. Ptasinska, T. Märk, and P. Scheier, J. Chem. Phys. 124, 124310 (2006).
- S. Denifl, F. Zappa, I. Mähr, J. Lecointre, M. Probst, T. D. Märk, and P. Scheier, Phys. Rev. Lett. 97, 043201 (2006).
- K. Aflatooni, A. M. Scheer, and P. D. Burrow, J. Chem. Phys. 125, 054301 (2006).
- D. Huber, M. Beikircher, S. Denifl, F. Zappa, S. Matejcik, A. Bacher, V. Grill, T. D. Märk, and P. Scheier, J. Chem. Phys. 125, 084304 (2006).
- I. I. Shafranyosh, M. I. Sukhoviya, and M. I. Shafranyosh,
J. Phys. B 39, 4155 (2006) . - H. Abdoul-Carime, S. Gohlke, E. Fischbach, J. Scheike, and E. Illenberger,
Chem. Phys. Lett. 387, 267 (2004) . - S. Denifl, P. Candori, S. Ptasińska, P. Limão-Vieira, V. Grill, T. D. Märk, and P. Scheier,
Eur. Phys. J. D 35, 391 (2005) . - K. Aflatooni, G. A. Gallup, and P. D. Burrow,
J. Phys. Chem. A 102, 6205 (1998) . - P. Mo
ejko and L. Sanche,
Radiat. Environ. Biophys. 42, 201 (2003) . - F. A. Gianturco and R. R. Lucchese, J. Chem. Phys. 120, 7446 (2004).
- A. Grandi, F. A. Gianturco, and N. Sanna, Phys. Rev. Lett. 93, 048103 (2004).
- S. Tonzani and C. H. Greene, J. Chem. Phys. 124, 054312 (2006).
- P. D. Burrow, J. Chem. Phys. 122, 087105 (2005).
- C. Winstead and V. McKoy, J. Chem. Phys. 125, 174304 (2006).
- C. Winstead and V. McKoy, J. Chem. Phys. 125, 244302 (2006).
- C. Winstead and V. McKoy, J. Chem. Phys. 125, 074302 (2006).
- K. Takatsuka and V. McKoy, Phys. Rev. A 24, 2473 (1981).
- K. Takatsuka and V. McKoy, Phys. Rev. A 30, 1734 (1984).
- C. Winstead and V. McKoy,
Adv. At., Mol., Opt. Phys. 36, 183 (1996) . - C. Winstead and V. McKoy,
Comput. Phys. Commun. 128, 386 (2000) . - M. W. Schmidt, K. K. Baldridge, J. A. Boatz et al.,
J. Comput. Chem. 14, 1347 (1993) . - M. J. Frisch, G. W. Trucks, H. B. Schlegel et al., GAUSSIAN 94, Revision D.4, Gaussian, Inc., Pittsburgh, PA, 1995.
- N. Foloppe and A. D. MacKerell, Jr.,
Biophys. J. 76, 3206 (1999) . - G. Schaftenaar and J. H. Noordik,
J. Comput.-Aided Mol. Des. 14, 123 (2000) . - T. H. Dunning, Jr., J. Chem. Phys. 55, 716 (1971).
- T. H. Dunning, Jr. and P. J. Hay, in Methods of Electronic Structure Theory, edited by H. F. Schaefer, III (Plenum, New York, 1977), p. 1.
- C. W. Bauschlicher, J. Chem. Phys. 72, 880 (1980).
- C. Winstead and V. McKoy, Phys. Rev. A 57, 3589 (1998).
- T. N. Rescigno and B. I. Schneider, Phys. Rev. A 45, 2894 (1992), and references therein.
- C. Winstead and V. McKoy, Phys. Rev. A 41, 49 (1990).
- S. Tonzani and C. H. Greene, J. Chem. Phys. 122, 014111 (2005).
- C. Winstead and V. McKoy, Phys. Rev. Lett. 98, 113201 (2007).








