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Faster strain fluctuation methods through partial volume updates

J. Chem. Phys. 130, 194706 (2009); doi:10.1063/1.3122383

Published 19 May 2009

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Sander Pronk1 and Phillip L. Geissler2
1Department of Bioengineering, University of California, Berkeley, Berkeley, 94720 California, USA
2Department of Chemistry, University of California, Berkeley, Berkeley, 94720 California, USA

Elastic systems that are spatially heterogeneous in their mechanical response pose special challenges for molecular simulations. Standard methods for sampling thermal fluctuations of a system's size and shape proceed through a series of homogeneous deformations, whose magnitudes can be severely restricted by its stiffest parts. Here we present a Monte Carlo algorithm designed to circumvent this difficulty, which can be prohibitive in many systems of modern interest. By deforming randomly selected subvolumes alone, it naturally distributes the amplitude of spontaneous elastic fluctuations according to intrinsic heterogeneity. We describe in detail implementations of such “slice moves” that are consistent with detailed balance. Their practical application is illustrated for crystals of two-dimensional hard disks and random networks of cross-linked polymers. ©2009 American Institute of Physics
History: Received 13 October 2008; accepted 31 March 2009; published 19 May 2009
Permalink: http://link.aip.org/link/?JCPSA6/130/194706/1
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KEYWORDS and PACS

Keywords
PACS
  • 81.40.Jj
    Elasticity and anelasticity, stress-strain relations
  • 61.41.+e
    Structure of polymers, elastomers, and plastics
  • 61.43.Bn
    Structural modeling of disordered solids
  • 62.20.F-
    Deformation and plasticity of solids
  • 81.40.Lm
    Deformation, plasticity, and creep
  • 62.20.D-
    Elasticity of solids
  • YEAR: 2009

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PUBLICATION DATA

ISSN:
0021-9606 (print)   1089-7690 (online)
Publisher:
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