A soft-core Gay–Berne model for the simulation of liquid crystals by Hamiltonian replica exchange
J. Chem. Phys. 131, 174107 (2009); doi:10.1063/1.3254019
Published 3 November 2009
You are not logged in to this journal. Log in
The Gay–Berne (GB) potential has proved highly successful in the simulation of liquid crystal phases, although it is fairly demanding in terms of resources for simulations of large (e.g., N>105) systems, as increasingly required in applications. Here, we introduce a soft-core GB model, which exhibits both liquid crystal phase behavior and rapid equilibration. We show that the Hamiltonian replica exchange method, coupled with the newly introduced soft-core GB model, can effectively speed up the equilibration of a GB liquid crystal phase by frequent exchange of configurations between replicas, while still recovering the mesogenic properties of the standard GB potential.
©2009 American Institute of Physics
| History: | Received 27 April 2009; accepted 3 October 2009; published 3 November 2009 |
| Permalink: |
http://link.aip.org/link/?JCPSA6/131/174107/1 |
REFERENCES (46)
For access to fully linked references, you need to log in.
For access to fully linked references, you need to Log in.
- M. R. Wilson,
Int. Rev. Phys. Chem. 24, 421 (2005) . - Advances in the Computer Simulation of Liquid Crystals, 1st ed., edited by P. Pasini and C. Zannoni (Kluwer, Dordrecht, 1999).
- C. Zannoni,
J. Mater. Chem. 11, 2637 (2001) . - C. M. Care and D. J. Cleaver,
Rep. Prog. Phys. 68, 2665 (2005) . - M. R. Wilson,
Chem. Soc. Rev. 36, 1881 (2007) . - G. Tiberio, L. Muccioli, R. Berardi, and C. Zannoni,
ChemPhysChem 10, 125 (2009) . - R. Berardi, A. P. J. Emerson, and C. Zannoni,
J. Chem. Soc., Faraday Trans. 89, 4069 (1993) . - R. Berardi and C. Zannoni, J. Chem. Phys. 113, 5971 (2000).
- R. Berardi, M. Ricci, and C. Zannoni,
ChemPhysChem 2, 443 (2001) . - M. Ricci, M. Mazzeo, R. Berardi, P. Pasini, and C. Zannoni,
Faraday Discuss. 144, 171 (2010) . - J. G. Gay and B. J. Berne, J. Chem. Phys. 74, 3316 (1981).
- J. S. Lintuvuori and M. R. Wilson, J. Chem. Phys. 128, 044906.1 (2008).
- Z. E. Hughes, L. M. Stimson, H. Slim, J. S. Lintuvuori, J. M. Ilnytskyi, and M. R. Wilson,
Comput. Phys. Commun. 178, 724 (2008) . - J. R. Errington, J. Chem. Phys. 118, 9915 (2003).
- F. G. Wang and D. P. Landau, Phys. Rev. Lett. 86, 2050 (2001).
- M. S. Shell, P. G. Debenedetti, and A. Z. Panagiotopoulos, J. Chem. Phys. 119, 9406 (2003).
- J. Kim, J. E. Straub, and T. Keyes, Phys. Rev. Lett. 97, 050601 (2006).
- J. Kim, J. E. Straub, and T. Keyes, J. Chem. Phys. 126, 135101 (2007).
- J. Kim, T. Keyes, and J. E. Straub, J. Chem. Phys. 130, 124112 (2009).
- D. J. Earl and M. W. Deem,
Phys. Chem. Chem. Phys. 7, 3910 (2005) . - C. Y. Lin, C. K. Hu, and U. H. E. Hansmann,
Proteins 52, 436 (2003) . - U. H. E. Hansmann,
Chem. Phys. Lett. 281, 140 (1997) . - H. A. Slim and M. R. Wilson,
J. Chem. Theory Comput. 4, 1570 (2008) . - Y. Sugita, A. Kitao, and Y. Okamoto, J. Chem. Phys. 113, 6042 (2000).
- H. Fukunishi, O. Watanabe, and S. Takada, J. Chem. Phys. 116, 9058 (2002).
- P. Liu, B. Kim, R. A. Friesner, and B. J. Berne,
Proc. Natl. Acad. Sci. U.S.A. 102, 13749 (2005) . - R. Affentranger, I. Tavernelli, and E. E. Di Iorio,
J. Chem. Theory Comput. 2, 217 (2006) . - J. Hritz and C. Oostenbrink, J. Chem. Phys. 128, 144121.1 (2008).
- R. Berardi, C. Fava, and C. Zannoni,
Chem. Phys. Lett. 236, 462 (1995) . - D. J. Cleaver, C. M. Care, M. P. Allen, and M. P. Neal, Phys. Rev. E 54, 559 (1996).
- R. Berardi, C. Fava, and C. Zannoni,
Chem. Phys. Lett. 297, 8 (1998) . - R. Everaers and M. R. Ejtehadi, Phys. Rev. E 67, 041710 (2003).
- M. Babadi, R. Everaers, and M. R. Ejtehadi, J. Chem. Phys. 124, 174708 (2006).
- L. Paramonov and S. N. Yaliraki, J. Chem. Phys. 123, 194111.1 (2005).
- P. J. Hoogerbrugge and J. M. V. A. Koelman,
Europhys. Lett. 19, 155 (1992) . - J. M. V. A. Koelman and P. J. Hoogerbrugge,
Europhys. Lett. 21, 363 (1993) . - P. Espanol and P. Warren,
Europhys. Lett. 30, 191 (1995) . - M. P. Allen and G. Germano,
Mol. Phys. 104, 3225 (2006) . - R. Berardi, L. Muccioli and C. Zannoni, J. Chem. Phys. 128, 024905.1 (2008).
- R. Berardi, J. S. Lintuvuori, M. R. Wilson, and C. Zannoni (unpublished).
- M. P. Allen and D. J. Tildesley, Computer Simulation of Liquids (Oxford University Press, Oxford, 1989).
- D. Frenkel and B. Smit, Understanding Molecular Simulations: From Algorithms to Applications, 2nd ed. (Academic, New York, 2001).
- H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak, J. Chem. Phys. 81, 3684 (1984).
- C. Zannoni, in Nuclear Magnetic Resonance of Liquid Crystals, edited by J. Emsley (Reidel, Dordrecht, 1985), Chap. 1, pp. 1–34.
- R. Berardi, L. Muccioli, S. Orlandi, M. Ricci and C. Zannoni,
J. Phys.: Condens. Matter 20, 463101.1 (2008) . - M. L. Klein and W. Shinoda,
Science 321, 798 (2008) .








