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Visualization of individual DNA molecules in a small-scale coating flow

J. Rheol. Volume 48, Issue 4, pp. 745-764 (July 2004)

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KEYWORDS and PACS

Keywords
PACS
  • 87.14.Gg
    DNA, RNA
  • 83.80.Lz
    Physiological materials (rheology) e.g. blood, collagen, etc
  • 83.50.Jf
    Extensional flow and combined shear and extension
  • 47.80.+v
    Instrumentation for fluid dynamics
  • YEAR: 2004

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PUBLICATION DATA

ISSN:
0148-6055 (print)   1520-8516 (online)
Publisher:
AIP is a member of CrossRef SOR
Rajat Duggal and Matteo Pasquali
Department of Chemical Engineering, Rice University, MS 362, 6100 Main Street, Houston, Texas 77005
Individual DNA molecules in an ultradilute solution were observed with a fluorescence microscope as they flow between a scaled-down rotating roll and a stationary glass knife. The roll picks up a thin layer of liquid from a pool and drags it to the knife, establishing a bead delineated by two menisci. At low roll speed the flow is premetered and there is a large recirculation. The DNA experiences nearly rectilinear shear flow at the minimum gap position where there is a zero velocity surface. We report the mean and the distribution of fractional extension of DNA molecules and show that the mean fractional extension asymptotes to 0.5, in agreement with the results of Smith et al. [D. E. Smith et al., Science 283, 1724 (1999)]. Interestingly, no polymer distortion is observed at the two menisci. At high roll speed, capillarity is not strong enough to drive backflow; the big recirculation under the coverslip breaks into two smaller recirculations and two separation surfaces arise upstream and downstream of the location of the minimum gap. At the upstream separation surface, most DNA molecules are extended parallel to the knife as they traverse the field of view. We report the distribution of DNA extension and shape in this flow region. Slow, nodular recirculations are present under the upstream and downstream free surfaces. Notably, most DNA molecules stretch axially as they move in these slow recirculating regions. ©2004 The Society of Rheology.
History: Received 30 June 2003; revised 27 April 2004
Permalink: http://dx.doi.org/10.1122/1.1764825

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