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Phys. Rev. E 80, 031129 (2009) [8 pages]

Long delay times in reaction rates increase intrinsic fluctuations

Matthew Scott
Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
Received 30 May 2009; published 22 September 2009

In spatially distributed cellular systems, it is often convenient to represent complicated auxiliary pathways and spatial transport by time-delayed reaction rates. Furthermore, many of the reactants appear in low numbers necessitating a probabilistic description. The coupling of delayed rates with stochastic dynamics leads to a probability conservation equation characterizing a non-Markovian process. A systematic approximation is derived that incorporates the effect of delayed rates on the characterization of molecular noise valid in the limit of long delay time. By way of a simple example, we show that delayed reaction dynamics can only increase intrinsic fluctuations about the steady state. The method is general enough to accommodate nonlinear transition rates allowing characterization of fluctuations around a delay-induced limit cycle.

©2009 The American Physical Society

URL: http://link.aps.org/doi/10.1103/PhysRevE.80.031129
DOI: 10.1103/PhysRevE.80.031129
PACS: 05.40.-a; 05.10.Gg; 82.20.Fd; 87.10.-e
  • 05.40.-a
    Fluctuation phenomena, random processes, noise, and Brownian motion
  • 05.10.Gg
    Stochastic analysis methods (statistical physics/nonlinear dynamics)
  • 82.20.Fd
    Collision theories and trajectory models of chemical kinetics
  • 87.10.-e
    General theory and mathematical aspects (biological/medical physics)
  • YEAR: 2009
KEYWORDS: biochemistry, cellular biophysics, fluctuations, probability, reaction kinetics theory

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