Hydrogen bonds in the nucleobase-gold complexes: Photoelectron spectroscopy and density functional calculations
Source: J. Chem. Phys. 136, 014305 (2012); http://dx.doi.org/10.1063/1.3671945
Published 3 January 2012
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The nucleobase-gold complexes were studied with anion photoelectron spectroscopy and density functional calculations. The vertical detachment energies of uracil-Au−, thymine-Au−, cytosine-Au−, adenine-Au−, and guanine-Au− were estimated to be 3.37 ± 0.08 eV, 3.40 ± 0.08 eV, 3.23 ± 0.08 eV, 3.28 ± 0.08 eV, and 3.43 ± 0.08 eV, respectively, based on their photoelectron spectra. The combination of photoelectron spectroscopy experiments and density functional calculations reveals the presence of two or more isomers for these nucleobase-gold complexes. The major isomers detected in the experiments probably are formed by Au anion with the canonical tautomers of the nucleobases. The gold anion essentially interacts with the nucleobases through N-H···Au hydrogen bonds.
©2012 American Institute of Physics
| History: | Received 20 September 2011; accepted 4 December 2011; published 3 January 2012 |
| Digital Object Identifier: |
http://dx.doi.org/10.1063/1.3671945 |
REFERENCES (88)
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- C. A. Mirkin, R. L. Letsinger, R. C. Mucic, and J. J. Storhoff,
Nature (London) 382, 607 (1996) . - C. A. Mirkin,
Inorg. Chem. 39, 2258 (2000) . - H. Nakao, H. Shiigi, Y. Yamamoto, S. Tokonami, T. Nagaoka, S. Sugiyama, and T. Ohtani,
Nano Lett. 3, 1391 (2003) . - T. M. Herne and M. J. Tarlov,
J. Am. Chem. Soc. 119, 8916 (1997) . - A. B. Steel, T. M. Herne, and M. J. Tarlov,
Anal. Chem. 70, 4670 (1998) . - L. M. Demers, C. A. Mirkin, R. C. Mucic, R. A. Reynolds, R. L. Letsinger, R. Elghanian, and G. Viswanadham,
Anal. Chem. 72, 5535 (2000) . - C. Woffendin, Z. Y. Yang, Udaykumar, L. Xu, N. S. Yang, M. J. Sheehy, and G. J. Nabel,
Proc. Natl. Acad. Sci. U.S.A. 91, 11581 (1994) . - L. M. Demers, M. Östblom, H. Zhang, N.-H. Jang, B. Liedberg, and C. A. Mirkin,
J. Am. Chem. Soc. 124, 11248 (2002) . - A. Gourishankar, S. Shukla, K. N. Ganesh, and M. Sastry,
J. Am. Chem. Soc. 126, 13186 (2004) . - T. Boland and B. D. Ratner,
Langmuir 10, 3845 (1994) . - N. J. Tao, J. A. DeRose, and S. M. Lindsay,
J. Phys. Chem. 97, 910 (1993) . - W.-H. Li, W. Haiss, S. Floate, and R. J. Nichols,
Langmuir 15, 4875 (1999) . - N. H. Jang,
Bull. Korean Chem. Soc. 23, 1790 (2002) . - H. Kimura-Suda, D. Y. Petrovykh, M. J. Tarlov, and L. J. Whitman,
J. Am. Chem. Soc. 125, 9014 (2003) . - B. A. Cerda and C. Wesdemiotis,
J. Am. Chem. Soc. 118, 11884 (1996) . - M. T. Rodgers and P. B. Armentrout,
J. Am. Chem. Soc. 122, 8548 (2000) . - M. T. Rodgers and P. B. Armentrout,
J. Am. Chem. Soc. 124, 2678 (2002) . - D. B. Pedersen, M. Z. Zgierski, S. Denommee, and B. Simard,
J. Am. Chem. Soc. 124, 6686 (2002) . - D. B. Pedersen, B. Simard, A. Martinez, and A. Moussatova,
J. Phys. Chem. A 107, 6464 (2003) . - D. B. Pedersen, M. Z. Zgierski, and B. Simard,
J. Phys. Chem. A 107, 6457 (2003) . - H. Liu, J.-L. Sun, Y. Hu, K.-L. Han, and S. Yang,
Chem. Phys. Lett. 389, 342 (2004) . - J.-L. Sun, H. Liu, H.-M. Wang, K.-L. Han, and S. Yang,
Chem. Phys. Lett. 392, 285 (2004) . - E. A. L. Gillis, K. Rajabi, and T. D. Fridgen,
J. Phys. Chem. A 113, 824 (2009) . - S. A. Krasnokutski and D.-S. Yang,
J. Phys. Chem. A 111, 10567 (2007) . - S. A. Krasnokutski, Y. Lei, J. S. Lee, and D.-S. Yang, J. Chem. Phys. 129, 124309 (2008).
- S. A. Krasnokutski, J. S. Lee, and D.-S. Yang, J. Chem. Phys. 132, 044304 (2010).
- J. V. Burda, J. Sponer, J. Leszczynski, and P. Hobza,
J. Phys. Chem. B 101, 9670 (1997) . - E. S. Kryachko and F. Remacle,
J. Phys. Chem. B 109, 22746 (2005) . - E. S. Kryachko and F. Remacle,
Nano Lett. 5, 735 (2005) . - A. Kumar, P. C. Mishra, and S. Suhai,
J. Phys. Chem. A 110, 7719 (2006) . - P. J. Mohan, A. Datta, S. S. Mallajosyula, and S. K. Pati,
J. Phys. Chem. B 110, 18661 (2006) . - P. Sharma, H. Singh, S. Sharma, and H. Singh,
J. Chem. Theory. Comput. 3, 2301 (2007) . - J. Valdespino-Saenz and A. Martinez,
J. Phys. Chem. A 112, 2408 (2008) . - M. K. Shukla, M. Dubey, E. Zakar, and J. Leszczynski,
J. Phys. Chem. C 113, 3960 (2009) . - A. Martinez,
J. Phys. Chem. A 113, 1134 (2009) . - G. Lv, F. D. Wei, H. Jiang, Y. Y. Zhou, and X. M. Wang,
J. Mol. Struct. THEOCHEM 915, 98 (2009) . - E. S. Kryachko, Pol. J. Chem. 83, 917 (2009).
- J. Valdespino-Saenz and A. Martinez,
J. Mol. Struct. THEOCHEM 939, 34 (2010) . - A. Martinez,
J. Phys. Chem. C 114, 21240 (2010) . - G. Lv, F. D. Wei, Q. N. Li, Q. Shen, H. Jiang, Y. Y. Zhou, and X. M. Wang,
J. Nanosci. Nanotechnol. 10, 809 (2010) . - L. Brammer, J. M. Charnock, P. L. Goggin, R. J. Goodfellow, T. F. Koetzle, and A. G. Orpen,
J. Chem. Soc., Chem. Commun. 443 (1987) . - L. Brammer, J. M. Charnock, P. L. Goggin, R. J. Goodfellow, A. G. Orpen, and T. F. Koetzle,
J. Chem. Soc., Dalton Trans. 1789 (1991) . - L. Brammer, M. C. McCann, R. M. Bullock, R. K. McMullan, and P. Sherwood,
Organometallics 11, 2339 (1992) . - L. Brammer, D. Zhao, F. T. Ladipo, and J. Braddock-Wilking,
Acta Crystallogr., Sect. B: Struct. Sci. 51, 632 (1995) . - L. Brammer,
Dalton Trans. 3145 (2003) . - P. E. M. Siegbahn, O. Eisenstein, A. L. Rheingold, and T. F. Koetzle,
Acc. Chem. Res. 29, 348 (1996) . - D. Braga, F. Grepioni, E. Tedesco, K. Biradha, and G. R. Desiraju,
Organometallics 15, 2692 (1996) . - E. S. Shubina, N. V. Belkova, and L. M. Epstein, J. Organomet. Chem. 17, 536 (1997).
- G. Orlova and S. Scheiner,
Organometallics 17, 4362 (1998) . - J. C. Mareque Rivas and L. Brammer,
Coord. Chem. Rev. 183, 43 (1999) . - M. J. Calhorda, Chem. Commun. (Cambridge) 801 (2000).
- X. Li, Y.-J. Ko, H. Wang, K. H. Bowen, A. Guevara-Garcia, and A. Martinez, J. Chem. Phys. 134, 054318 (2011).
- L.-S. Wang,
Phys. Chem. Chem. Phys. 12, 8694 (2010) . - E. S. Kryachko, A. Karpfen, and F. Remacle,
J. Phys. Chem. A 109, 7309 (2005) . - E. Kryachko and F. Remacle,
J. Theor. Comput. Chem. 19, 219 (2007) . - E. S. Kryachko and F. Remacle, J. Chem. Phys. 127, 194305 (2007).
- E. S. Kryachko,
J. Mol. Struct. 880, 23 (2008) . - H. Nuss and M. Jansen,
Angew. Chem., Int. Ed. 45, 4369 (2006) . - H.-G. Xu, Z.-G. Zhang, Y. Feng, J. Yuan, Y. Zhao, and W. J. Zheng,
Chem. Phys. Lett. 487, 204 (2010) . - M. J. Frisch, G. W. Trucks, H. B. Schlegel et al., GAUSSIAN 09, Gaussian, Inc., Wallingford, CT, 2009.
- E. S. Kryachko, M. T. Nguyen, and T. Zeegers-Huyskens,
J. Phys. Chem. A 105, 1288 (2001) . - S. X. Tian, C. F. Zhang, Z. J. Zhang, X. J. Chen, and K. Z. Xu,
Chem. Phys. 242, 217 (1999) . - E. S. Kryachko, M. T. Nguyen, and T. Zeegers-Huyskens,
J. Phys. Chem. A 105, 1934 (2001) . - J. Rejnek, M. Hanus, M. Kabelac, F. Ryjacek, and P. Hobza,
Phys. Chem. Chem. Phys. 7, 2006 (2005) . - M. J. Scanlan and I. H. Hillier,
J. Am. Chem. Soc. 106, 3737 (1984) . - T. K. Ha and H. H. Gunthard,
J. Am. Chem. Soc. 115, 11939 (1993) . - M. Kabelac and P. Hobza,
J. Phys. Chem. B 110, 14515 (2006) . - S. A. Trygubenko, T. V. Bogdan, M. Rueda, M. Orozco, F. J. Luque, J. Sponer, P. Slavicek, and P. Hobza,
Phys. Chem. Chem. Phys. 4, 4192 (2002) . - M. Hanus, M. Kabelac, J. Rejnek, F. Ryjacek, and P. Hobza,
J. Phys. Chem. B 108, 2087 (2004) . - M. Schreiber and L. González,
J. Comput. Chem. 28, 2299 (2007) . - W. Liang, H. R. Li, X. B. Hu, and S. J. Han,
Chem. Phys. 328, 93 (2006) . - M. K. Shukla and J. Leszczynski,
Chem. Phys. Lett. 429, 261 (2006) . - M. Sabio, S. Topiol, and W. C. Lumma,
J. Phys. Chem. 94, 1366 (1990) . - A. E. Reed, L. A. Curtiss, and F. Weinhold,
Chem. Rev. 88, 899 (1988) . - A. E. Reed and F. Weinhold, J. Chem. Phys. 78, 4066 (1983).
- H. Haekkinen, B. Yoon, U. Landman, X. Li, H. Zhai, and L. Wang,
J. Phys. Chem. A 107, 6168 (2003) . - A. Bondi,
J. Phys. Chem. 68, 441 (1964) . - R. S. Rowland and R. Taylor,
J. Phys. Chem. 100, 7384 (1996) . - E. S. Kryachko and F. Remacle,
Chem. Phys. Lett. 404, 142 (2005) . - E. Arunan, G. R. Desiraju, R. A. Klein, J. Sadlej, S. Scheiner, I. Alkorta, D. C. Clary, R. H. Crabtree, J. J. Dannenberg, P. Hobza, H. G. Kjaergaard, A. C. Legon, B. Mennucci, and D. J. Nesbitt,
Pure Appl. Chem. 83, 1637 (2011) . - B. P. Hay, M. Gutowski, D. A. Dixon, J. Garza, R. Vargas, and B. A. Moyer,
J. Am. Chem. Soc. 126, 7925 (2004) . - G. A. Jeffrey, An Introduction to Hydrogen Bonding (Oxford University Press, New York, 1997).
- M. M. Szczesniak, G. Chalasinski, S. M. Cybulski, and P. Cieplak, J. Chem. Phys. 98, 3078 (1993).
- Y. Gu, T. Kar, and S. Scheiner,
J. Am. Chem. Soc. 121, 9411 (1999) . - S. Gronert,
J. Am. Chem. Soc. 115, 10258 (1993) . - M. Brookhart, M. L. H. Green, and G. Parkin,
Proc. Natl. Acad. Sci. U.S.A. 104, 6908 (2007) . - A. Demolliens, Y. Jean, and O. Eisenstein,
Organometallics 5, 1457 (1986) . - W. Yao, O. Eisenstein, and R. H. Crabtree,
Inorg. Chim. Acta. 254, 105 (1997) .
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