Chasing charge localization and chemical reactivity following photoionization in liquid water
Source: J. Chem. Phys. 135, 224510 (2012); http://dx.doi.org/10.1063/1.3664746
Published 12 December 2011
EPAPS
- SI_revision_final.doc (473 kB) 9-Dec-2011 8:1
KEYWORDS and PACS
ab initio calculations,
approximation theory,
biochemistry,
biological tissues,
chemical exchanges,
coupled cluster calculations,
density functional theory,
high-speed optical techniques,
molecular biophysics,
molecular dynamics method,
molecule-photon collisions,
optical pumping,
photochemistry,
photoionisation,
quantum theory,
reaction kinetics theory,
spectral line shift,
ultraviolet spectra,
visible spectra,
water
- 87.15.R-
Biochemical reactions and kinetics - 87.15.ap
Molecular dynamics simulation in molecular biophysics - 82.50.-m
Photochemistry - 82.39.Jn
Charge (electron, proton) transfer in biological systems (chemical kinetics) - 82.30.Hk
Chemical exchanges (substitution, atom transfer, abstraction, disproportionation, and group exchange) - 82.20.Wt
Computational modeling and simulation of chemical kinetics - YEAR: 2011
RELATED DATABASES
To view database links for this article,
you need to log in.
you need to log in.
To view database links for this article,
you need to log in.
you need to log in.
PUBLICATION DATA
The ultrafast dynamics of the cationic hole formed in bulk liquid water following ionization is investigated by ab initio molecular dynamics simulations and an experimentally accessible signature is suggested that might be tracked by femtosecond pump-probe spectroscopy. This is one of the fastest fundamental processes occurring in radiation-induced chemistry in aqueous systems and biological tissue. However, unlike the excess electron formed in the same process, the nature and time evolution of the cationic hole has been hitherto little studied. Simulations show that an initially partially delocalized cationic hole localizes within ~30 fs after which proton transfer to a neighboring water molecule proceeds practically immediately, leading to the formation of the OH radical and the hydronium cation in a reaction which can be formally written as H2O+ + H2O
OH + H3O+. The exact amount of initial spin delocalization is, however, somewhat method dependent, being realistically described by approximate density functional theory methods corrected for the self-interaction error. Localization, and then the evolving separation of spin and charge, changes the electronic structure of the radical center. This is manifested in the spectrum of electronic excitations which is calculated for the ensemble of ab initio molecular dynamics trajectories using a quantum mechanics/molecular mechanics (QM/MM) formalism applying the equation of motion coupled-clusters method to the radical core. A clear spectroscopic signature is predicted by the theoretical model: as the hole transforms into a hydroxyl radical, a transient electronic absorption in the visible shifts to the blue, growing toward the near ultraviolet. Experimental evidence for this primary radiation-induced process is sought using femtosecond photoionization of liquid water excited with two photons at 11 eV. Transient absorption measurements carried out with ~40 fs time resolution and broadband spectral probing across the near-UV and visible are presented and direct comparisons with the theoretical simulations are made. Within the sensitivity and time resolution of the current measurement, a matching spectral signature is not detected. This result is used to place an upper limit on the absorption strength and/or lifetime of the localized H2O
species.
©2011 American Institute of Physics
OH + H3O+. The exact amount of initial spin delocalization is, however, somewhat method dependent, being realistically described by approximate density functional theory methods corrected for the self-interaction error. Localization, and then the evolving separation of spin and charge, changes the electronic structure of the radical center. This is manifested in the spectrum of electronic excitations which is calculated for the ensemble of ab initio molecular dynamics trajectories using a quantum mechanics/molecular mechanics (QM/MM) formalism applying the equation of motion coupled-clusters method to the radical core. A clear spectroscopic signature is predicted by the theoretical model: as the hole transforms into a hydroxyl radical, a transient electronic absorption in the visible shifts to the blue, growing toward the near ultraviolet. Experimental evidence for this primary radiation-induced process is sought using femtosecond photoionization of liquid water excited with two photons at 11 eV. Transient absorption measurements carried out with ~40 fs time resolution and broadband spectral probing across the near-UV and visible are presented and direct comparisons with the theoretical simulations are made. Within the sensitivity and time resolution of the current measurement, a matching spectral signature is not detected. This result is used to place an upper limit on the absorption strength and/or lifetime of the localized H2O| History: | Received 7 July 2011; accepted 8 November 2011; published 12 December 2011 |
| Digital Object Identifier: |
http://dx.doi.org/10.1063/1.3664746 |
REFERENCES (63)
For access to fully linked references, you need to log in.
For access to fully linked references, you need to Log in.
- B. C. Garrett, D. A. Dixon, D. M. Camaioni, D. M. Chipman, M. A. Johnson, C. D. Jonah, G. A. Kimmel, J. H. Miller, T. N. Rescigno, P. J. Rossky, S. S. Xantheas, S. D. Colson, A. H. Laufer, D. Ray, P. F. Barbara, D. M. Bartels, K. H. Becker, H. Bowen, S. E. Bradforth, I. Carmichael, J. V. Coe, L. R. Corrales, J. P. Cowin, M. Dupuis, K. B. Eisenthal, J. A. Franz, M. S. Gutowski, K. D. Jordan, B. D. Kay, J. A. LaVerne, S. V. Lymar, T. E. Madey, C. W. McCurdy, D. Meisel, S. Mukamel, A. R. Nilsson, T. M. Orlando, N. G. Petrik, S. M. Pimblott, J. R. Rustad, G. K. Schenter, S. J. Singer, A. Tokmakoff, L. S. Wang, C. Wittig, and T. S. Zwier,
Chem. Rev. 105, 355 (2005) . - G. V. Buxton, C. L. Greenstock, W. P. Helman, and A. B. Ross,
J. Phys. Chem. Ref. Data 17, 513 (1988) . - P. Kambhampati, D. H. Son, T. W. Kee, and P. F. Barbara,
J. Phys. Chem. A 106, 2374 (2002) . - J. A. Kloepfer, V. H. Vilchiz, V. A. Lenchenkov, X. Y. Chen, and S. E. Bradforth, J. Chem. Phys. 117, 766 (2002).
- G. Stein, Israel J. Chem. 9, 413 (1971).
- O. Marsalek, T. Frigato, J. VandeVondele, S. E. Bradforth, B. Schmidt, C. Schutte, and P. Jungwirth,
J. Phys. Chem. B 114, 915 (2010) . - K. H. Schmidt and D. M. Bartels,
Chem. Phys. 190, 145 (1995) . - S. M. Pimblott,
J. Phys. Chem. 95, 6946 (1991) . - T. Goulet and J.-P. Jay-Gerin, J. Chem. Phys. 97, 5076 (1992).
- J. A. LaVerne and S. M. Pimblott,
J. Phys. Chem. A 14, 9820 (2000) . - C. von Sonntag, Free-Radical-Induced DNA Damage and Its Repair: A Chemical Perspective (Springer, Berlin, 2006).
- C. D. Jonah, D. M. Bartels, and A. C. Chernovitz,
International Journal of Radiation Applications and Instrumentation. Part C. Radiation Physics and Chemistry 34, 145 (1989) . - T. Ellenberger, DNA Repair and Mutagenesis (ASM, Washington, 2005).
- Y. Gauduel, S. Pommeret, A. Migus, and A. Antonetti,
Chem. Phys. 149, 1 (1990) . - B. Winter, R. Weber, W. Widdra, M. Dittmar, M. Faubel, and I. V. Hertel,
J. Phys. Chem. A 108, 2625 (2004) . - C. G. Elles, A. E. Jailaubekov, R. A. Crowell, and S. E. Bradforth, J. Chem. Phys. 125, 044515 (2006).
- X. Chen, D. S. Larsen, S. E. Bradforth, and I. H. M. van Stokkum,
J. Phys. Chem. A 115, 3807 (2011) . - P. Han and D. M. Bartels,
J. Phys. Chem. 94, 5824 (1990) . - H. Tachikawa,
J. Phys. Chem. A 106, 6915 (2002) . - P. A. Pieniazek, J. VandeVondele, P. Jungwirth, A. I. Krylov, and S. E. Bradforth,
J. Phys. Chem. A 112, 6159 (2008) . - Q. Y. Cheng, F. A. Evangelista, A. C. Simmonett, Y. Yamaguchi, and H. F. Schaefer,
J. Phys. Chem. A 113, 13779 (2009) . - G. H. Gardenier, M. A. Johnson, and A. B. McCoy,
J. Phys. Chem. A 113, 4772 (2009) . - E. Kamarchik, O. Kostko, J. M. Bowman, M. Ahmed, and A. I. Krylov, J. Chem. Phys. 132, 194311 (2010).
- H. Tachikawa,
J. Phys. Chem. A 108, 7853 (2004) . - P. A. Pieniazek, E. J. Sundstrom, S. E. Bradforth, and A. I. Krylov,
J. Phys. Chem. A 113, 4423 (2009) . - A. Furuhama, M. Dupuis, and K. Hirao,
Phys. Chem. Chem. Phys. 10, 2033 (2008) . - A. Furuhama, M. Dupuis, and K. Hirao, J. Chem. Phys. 124, 164310 (2006).
- C. G. Elles, I. A. Shkrob, R. A. Crowell, and S. E. Bradforth, J. Chem. Phys. 126, 164503 (2007).
- X. Chen and S. E. Bradforth,
Annu. Rev. Phys. Chem. 59, 203 (2008) . - P. A. Pieniazek, E. J. Sundstrom, S. E. Bradforth, and A. I. Krylov,
J. Phys. Chem. A 113, 4423 (2009) . - C. G. Elles, C. A. Rivera, Y. Zhang, P. A. Pieniazek, and S. E. Bradforth, J. Chem. Phys. 130, 084501 (2009).
- A. Madarasz, P. J. Rossky, and L. Turi, J. Chem. Phys. 126 (2007).
- D. Borgis, P. J. Rossky, and L. Turi, J. Chem. Phys. 127 (2007).
- A. A. Mosyak, O. V. Prezhdo, and P. J. Rossky, J. Chem. Phys. 109, 6390 (1998).
- G. B. Griffin, R. M. Young, O. T. Ehrler, and D. M. Neumark, J. Chem. Phys. 131 (2009).
- A. E. Bragg, J. R. R. Verlet, A. Kammrath, O. Cheshnovsky, and D. M. Neumark,
Science 306, 669 (2004) . - A. R. Menzeleev and T. F. Miller, J. Chem. Phys. 132 (2010).
- S. Grimme,
J. Comput. Chem. 27, 1787 (2006) . - J. VandeVondele and M. Sprik,
Phys. Chem. Chem. Phys. 7, 1363 (2005) . - J. Heyd, G. E. Scuseria, and M. Ernzerhof,
J. Chem. Phys. 118, 8207 (2003) . - A. D. Becke,
J. Chem. Phys. 98, 1372 (1993) . - M. Sodupe, J. Bertran, L. Rodriguez-Santiago, and E. J. Baerends,
J. Phys. Chem. A 103, 166 (1999) . - D. M. Chipman,
J. Phys. Chem. A 112, 13372 (2008) . - J. VandeVondele, M. Krack, F. Mohamed, M. Parrinello, T. Chassaing, and J. Hutter,
Comput. Phys. Commun. 167, 103 (2005) . - H. J. C. Berendsen, J. R. Grigera, and T. P. Straatsma,
J. Phys. Chem. 91, 6269 (1987) . - I. Janik, D. M. Bartels, and C. D. Jonah,
J. Phys. Chem. A 111, 1835 (2007) . - Y. Shao, L. F. Molnar, Y. Jung, J. Kussmann, C. Ochsenfeld, S. T. Brown, A. T. B. Gilbert, L. V. Slipchenko, S. V. Levchenko, D. P. O'Neill, R. A. DiStasio, R. C. Lochan, T. Wang, G. J. O. Beran, N. A. Besley, J. M. Herbert, C. Y. Lin, T. Van Voorhis, S. H. Chien, A. Sodt, R. P. Steele, V. A. Rassolov, P. E. Maslen, P. P. Korambath, R. D. Adamson, B. Austin, J. Baker, E. F. C. Byrd, H. Dachsel, R. J. Doerksen, A. Dreuw, B. D. Dunietz, A. D. Dutoi, T. R. Furlani, S. R. Gwaltney, A. Heyden, S. Hirata, C. P. Hsu, G. Kedziora, R. Z. Khalliulin, P. Klunzinger, A. M. Lee, M. S. Lee, W. Liang, I. Lotan, N. Nair, B. Peters, E. I. Proynov, P. A. Pieniazek, Y. M. Rhee, J. Ritchie, E. Rosta, C. D. Sherrill, A. C. Simmonett, J. E. Subotnik, H. L. Woodcock, W. Zhang, A. T. Bell, A. K. Chakraborty, D. M. Chipman, F. J. Keil, A. Warshel, W. J. Hehre, H. F. Schaefer, J. Kong, A. I. Krylov, P. M. W. Gill, and M. Head-Gordon,
Phys. Chem. Chem. Phys. 8, 3172 (2006) . - P. Hunt and M. Sprik,
ChemPhysChem 6, 1805 (2005) . - M. J. McGrath, J. I. Siepmann, I. F. W. Kuo, C. J. Mundy, J. VandeVondele, J. Hutter, F. Mohamed, and M. Krack,
J. Phys. Chem. A 110, 640 (2006) . - E. R. Davidson and W. T. Borden,
J. Phys. Chem. 87, 4783 (1983) . - D. Marx, M. E. Tuckerman, J. Hutter, and M. Parrinello,
Nature 397, 601 (1999) . - P. M. Hare, E. A. Price, and D. M. Bartels,
J. Phys. Chem. A 112, 6800 (2008) . - V. H. Vilchiz, J. A. Kloepfer, A. C. Germaine, V. A. Lenchenkov, and S. E. Bradforth,
J. Phys. Chem. A 105, 1711 (2001) . - M. K. Fischer, H. Rossmadl, and H. Iglev, J. Chem. Phys. 134, 214507 (2011).
- A. E. Jailaubekov and S. E. Bradforth, Appl. Phys. Lett. 87, 021107 (2005).
- M. J. Tauber, R. Mathies, X. Chen, and S. E. Bradforth, Rev. Sci. Instrum. 74, 4958 (2003).
- R. Lian, R. A. Crowell, and I. A. Shkrob,
J. Phys. Chem. A 109, 1510 (2005) . - V. H. Vilchiz, J. A. Kloepfer, A. C. Germaine, V. A. Lenchenkov, and S. E. Bradforth,
J. Phys. Chem. A 105, 1711 (2001) . - D. M. Bartels and R. A. Crowell,
J. Phys. Chem. A 104, 3349 (2000) . - Y. Zhang, L. Cass, C. G. Elles, and S. E. Bradforth (unpublished).
- P. C. do Couto and D. M. Chipman, J. Chem. Phys. 132, 244307 (2010).
- E. Livshits, R. S. Granot, and R. Baer,
J. Phys. Chem. A 115, 5735 (2011) . - See supplementary material at http://dx.doi.org/10.1063/1.3664746 for additional experimental and computational data and figures. [EPAPS]
ADVERTISEMENT


